search

Annanilsson-code / ProjectAppliedMolBiophys

Project in the course Applied Molecular Biophysics 2020
1 stars 1 forks source link

Chimera: saving the alignment #16

Open Annanilsson-code opened 3 years ago

Annanilsson-code commented 3 years ago

https://github.com/Annanilsson-code/ProjectAppliedMolBiophys/blob/3bf04679fd0c8addfd7d75f7627056039850c2c1/cc_calculation_prot.py#L13

When aligning 4o01.pdb and 4o0p.pdb and applying an electron density, we get this.

alignment_pdbs alignment_pdb_mrc

But after saving the mrc's and re-opening them, they look like this. So the alignment doesn't seem to be saved, which makes sense because the projections are also too dissimilar to be comparable. How can we make sure the alignment is saved? Or could it be something else going wrong?

alignment_mrc
FilipeMaia commented 3 years ago

Save the aligned PDBs and those aligned PDBs to create the electron densities.