AntonOresten / VectorizedKmers.jl

Fast K-mer counting in Julia
https://AntonOresten.github.io/VectorizedKmers.jl/
MIT License
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KmerCountScalar implementation #19

Closed AntonOresten closed 1 year ago

codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 80.00% and project coverage change: -3.09% :warning:

Comparison is base (84d0725) 55.93% compared to head (8472512) 52.84%. Report is 6 commits behind head on main.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #19 +/- ## ========================================== - Coverage 55.93% 52.84% -3.09% ========================================== Files 6 9 +3 Lines 177 193 +16 ========================================== + Hits 99 102 +3 - Misses 78 91 +13 ``` | [Files Changed](https://app.codecov.io/gh/anton083/VectorizedKmers.jl/pull/19?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Anton) | Coverage Δ | | |---|---|---| | [ext/BioSeqCUDAExt.jl](https://app.codecov.io/gh/anton083/VectorizedKmers.jl/pull/19?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Anton#diff-ZXh0L0Jpb1NlcUNVREFFeHQuamw=) | `0.00% <0.00%> (ø)` | | | [src/VectorizedKmers.jl](https://app.codecov.io/gh/anton083/VectorizedKmers.jl/pull/19?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Anton#diff-c3JjL1ZlY3Rvcml6ZWRLbWVycy5qbA==) | `100.00% <ø> (ø)` | | | [src/kmer\_count\_scalar.jl](https://app.codecov.io/gh/anton083/VectorizedKmers.jl/pull/19?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Anton#diff-c3JjL2ttZXJfY291bnRfc2NhbGFyLmps) | `0.00% <0.00%> (ø)` | | | [ext/BioSequencesExt.jl](https://app.codecov.io/gh/anton083/VectorizedKmers.jl/pull/19?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Anton#diff-ZXh0L0Jpb1NlcXVlbmNlc0V4dC5qbA==) | `100.00% <100.00%> (ø)` | | | [src/count\_kmers.jl](https://app.codecov.io/gh/anton083/VectorizedKmers.jl/pull/19?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Anton#diff-c3JjL2NvdW50X2ttZXJzLmps) | `100.00% <100.00%> (ø)` | | | [src/kmer\_count.jl](https://app.codecov.io/gh/anton083/VectorizedKmers.jl/pull/19?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Anton#diff-c3JjL2ttZXJfY291bnQuamw=) | `100.00% <100.00%> (ø)` | | | [src/kmer\_count\_matrix.jl](https://app.codecov.io/gh/anton083/VectorizedKmers.jl/pull/19?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Anton#diff-c3JjL2ttZXJfY291bnRfbWF0cml4Lmps) | `100.00% <100.00%> (ø)` | | | [src/kmer\_count\_vector.jl](https://app.codecov.io/gh/anton083/VectorizedKmers.jl/pull/19?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Anton#diff-c3JjL2ttZXJfY291bnRfdmVjdG9yLmps) | `100.00% <100.00%> (ø)` | |

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AntonOresten commented 1 year ago

Naahhh