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AntonelliLab / seqcap_processor

Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
MIT License
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Fix paralogs_to_ref.py #29

Closed bmichanderson closed 2 years ago

bmichanderson commented 2 years ago

The original had a problem when reference fasta entries had names with spaces. Biopython sets the id to the first element. Also, I ran into a problem when I had hidden directories in the target_contigs folder (running in a container, so maybe that was a problem?), so I changed it to only use directories that didn't start with a period.

tandermann commented 2 years ago

Thank you for the update @bmichanderson, I merged your pull-request.