search

AntonelliLab / seqcap_processor

Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
MIT License
21 stars 12 forks source link

Reconstructing phased sequences for homozygous individuals #9

Closed Anh-Thu-Weber closed 4 years ago

Anh-Thu-Weber commented 6 years ago

Hi,

I'm using your pipeline to reconstruct allele sequences for a particular locus, and I realised that the phasing step does not work for homozygous individuals even though the assembly step worked

Could you help me solve this?

Thanks in advance,

Alexandra

tandermann commented 4 years ago

Let me know if this is still an issue, I think I fixed this a while ago, but am just now gettign to clean up the raised issues here on github