Talk to phylo software and servers

AntonelliLab / supersmartR

:eyeglasses::deciduous_tree: Towards a modular SUPERSMART pipeline in R

MIT License

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Talk to phylo software and servers #6

Open DomBennett opened 6 years ago

DomBennett commented 6 years ago

Possible R packages to fill this niche:

https://cran.r-project.org/web/packages/ips/ips.pdf
https://bioconductor.org/packages/3.7/bioc/vignettes/msa/inst/doc/msa.pdf

rvosa commented 6 years ago

The CIPRES REST API gives access to muscle, mafft and raxml, besides a lot of others (including Bayesian tools). It would be pretty amazing if we would just use that and dispose of local command line dependencies: https://www.phylo.org/restusers/docs/tools