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ApolloDev / apollo-sv

Repository for Apollo-SV ontology. Versioning Apollo-SV independently of the software was made easiest by having it as a separate repository.
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A number of classes are deprecated but are used in logical axioms #222

Closed matentzn closed 1 year ago

matentzn commented 1 year ago

ERROR deprecated_class_reference APOLLO_SV:00000011 rdfs:subClassOf APOLLO_SV:00000208 ERROR deprecated_class_reference APOLLO_SV:00000096 rdfs:subClassOf IAO:0000030 ERROR deprecated_class_reference APOLLO_SV:00000125 rdfs:subClassOf IAO:0000030 ERROR deprecated_class_reference APOLLO_SV:00000143 rdfs:subClassOf BFO:0000016 ERROR deprecated_class_reference APOLLO_SV:00000146 rdfs:subClassOf IAO:0000007 ERROR deprecated_class_reference APOLLO_SV:00000148 rdfs:subClassOf IAO:0000033 ERROR deprecated_class_reference APOLLO_SV:00000192 rdfs:subClassOf IAO:0000027 ERROR deprecated_class_reference APOLLO_SV:00000198 rdfs:subClassOf IAO:0000030 ERROR deprecated_class_reference APOLLO_SV:00000199 rdfs:subClassOf APOLLO_SV:00000173 ERROR deprecated_class_reference APOLLO_SV:00000248 rdfs:subClassOf APOLLO_SV:00000247 ERROR deprecated_class_reference APOLLO_SV:00000249 rdfs:subClassOf APOLLO_SV:00000247 ERROR deprecated_class_reference APOLLO_SV:00000297 rdfs:subClassOf APOLLO_SV:00000243 ERROR deprecated_class_reference APOLLO_SV:00000316 rdfs:subClassOf OBI:0000679 ERROR deprecated_class_reference APOLLO_SV:00000370 rdfs:subClassOf BFO:0000016 ERROR deprecated_class_reference APOLLO_SV:00000399 rdfs:subClassOf IAO:0000027 ERROR deprecated_class_reference APOLLO_SV:00000435 rdfs:subClassOf BFO:0000038 ERROR deprecated_class_reference APOLLO_SV:00000475 rdfs:subClassOf IAO:0000416 ERROR deprecated_class_reference APOLLO_SV:00000496 rdfs:subClassOf IAO:0020000 ERROR deprecated_class_reference obo:apollo_sv/dev/apollo_sv.owl#APOLLO_SV_00000001 rdfs:subClassOf STATO:0000134 ERROR deprecated_class_reference obo:apollo_sv/dev/apollo_sv.owl#APOLLO_SV_00000002 rdfs:subClassOf STATO:0000134 ERROR deprecated_class_reference obo:apollo_sv/dev/apollo_sv.owl#APOLLO_SV_00000003 rdfs:subClassOf STATO:0000233

I could simply fix this for you by removing all logical axioms related to these classes. Let me know what you want to do.

matentzn commented 1 year ago

For all of these classes, two actions are recommended:

matentzn commented 1 year ago

@hoganwr is fine with both of these suggestions.