Updates to import GO more properly via ODK slme import.
Since SV used GO's 'reproduction' which is now obsolete, and because GO's 'reproductive process' is overly broad (the host's reproductive processes would qualify, and thus categorize any normal adult host as being infected in error), I also created class in SV called 'reproduction' which is the union of 'asexual reproduction' (to cover bacterial pathogens), 'sexual reproduction' (to cover eukaryotic pathogens that sexually reproduce), and 'viral life cycle' (to cover viral pathogens). We use the new reproduction class where the old GO one was used. We could have just left the class anonymous, but because we use it at least 4 or 5 times, it was much more convenient to "name" it.
Also found problems with class 'contamination acquisition' being not satisfiable due to use of has_specified_input and has_specified_output relations, which I changed to RO's 'has input' and 'has output'.
Updates to import GO more properly via ODK slme import.
Since SV used GO's 'reproduction' which is now obsolete, and because GO's 'reproductive process' is overly broad (the host's reproductive processes would qualify, and thus categorize any normal adult host as being infected in error), I also created class in SV called 'reproduction' which is the union of 'asexual reproduction' (to cover bacterial pathogens), 'sexual reproduction' (to cover eukaryotic pathogens that sexually reproduce), and 'viral life cycle' (to cover viral pathogens). We use the new reproduction class where the old GO one was used. We could have just left the class anonymous, but because we use it at least 4 or 5 times, it was much more convenient to "name" it.
Also found problems with class 'contamination acquisition' being not satisfiable due to use of has_specified_input and has_specified_output relations, which I changed to RO's 'has input' and 'has output'.
Fixes #246