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AppliedBioinformatics / BioNanoAnalyst

BioNanoAnalyst is a tool providing GUI to assess the genome assembly quality using BioNano data.
GNU General Public License v3.0
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GUI Error in Linux #12

Open ssri28 opened 3 years ago

ssri28 commented 3 years ago

Dear team,

I have installed the Bionano analyst tool in my AWS instance and trying to connect. The interface pop up no issue. after adding the fasta file and the bnx file. i am facing the issue in script location and tool location Though i have given proper locations in the tool.

Bionanoanalyst_interface_error

Kindly rectify the isuue so i could view the reference file map with BNX file.

Thanks Team

DanielFaulkner commented 3 years ago

Hi,

I am not part of the team, but it may help to diagnose the issue if you could you confirm a couple of details.

First, does the path to the directory look correct in the location windows of the interface? Second, could you confirm the locations you are selecting have the following files (case sensitive): Tools folder: Assembler and RefAligner Scripts folder: Pipeline.py and pipelineCL.py

Thanks