cannot find the second utils.r

AprilYuge / ATAC-annotation-benchmark

scripts for manuscript 'benchmarking automated cell type annotation tools for single-cell ATAC-seq data'

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cannot find the second utils.r #1

Open Smilenone opened 1 month ago

Smilenone commented 1 month ago

when running source('/gpfs/gibbs/pi/zhao/xs272/Multiomics/sc_benchmark/scripts/utils.r') for Lung, cannot find the corresponding utils.r, can you help?

AprilYuge commented 1 month ago

Hi, I think most needed functions are in the utils.r file under data_processing. The one that is missing is write.annotation, but in the current version of write.counts.transpose, saving annotations to a file is enable inside it. https://github.com/AprilYuge/ATAC-annotation-benchmark/blob/289016791c823a17ab8f20396e2d5ffd2c9264e4/data_processing/utils.r#L65