Ed Lavender on fix (2)

[AquaAuma]

Verbatim names. I noticed at least one record in the dataset where the verbatim name refers to eggs, whereas I think you are focusing on juveniles/adults.

@jepa

[jepa]

This issue was in the SCS survey, specifically:

• HEMITRIPTERUS AMERICANUS, EGGS , Hemitripterus americanus , aphia_id: 159518
• RAJA EGGS, Raja, aphia_id: 105766

I explored the clean_taxa() function and it deos not capture this because worrms does identify _HEMITRIPTERUS AMERICANUS as a name, regardless of the "egg" part. Need to think on a overall fix.

@AquaAuma in the meantime, can you re-run the get_scs.R or we can just filte out those two species from the dataset?

[AquaAuma]

if the taxonomic function does not fix this issue, we can filter directly in the R code, I think that's fine as we've done this elsewhere too I think

[jepa]

Done manually and updated the dataset in the googleDrive. Note that I was not able to run the FAGS part

[AquaAuma]

I don't use the ggdrive anymore for the public repo, where is the dataset you're talking about? What's the FAGS part?

[jepa]

Fixed issue, see 087d96b05f8f2df0ea45f42b900f4bdaa416ceef for data, cleaning code and summary and bb8d9ee49b9d849162af283d2d1608149a55ab59 for the FAGS part