AquaAuma / FishGlob_data

Database and methods related to the manuscript "An integrated database of fish biodiversity sampled with scientific bottom trawl surveys"
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problem with NEUS clean survey? #37

Closed AquaAuma closed 8 months ago

AquaAuma commented 9 months ago

I am getting this in the clean NEUS survey data Screenshot 2023-11-16 at 12 02 56 PM which does not seem normal? I don't remember whether we had the possibility to transform abundance/weights in cpue/cpua for NEUS?

Ideas @zoekitchel @mpinsky

AquaAuma commented 9 months ago

I had to modify the survey summary to plot num and wgt instead of num_cpue or num_cpua and wgt_cpueor wgt_cpua, and remembered there was a choice not to transform into cpue/cpua because they are constant variables in the survey

LiamMacNeil commented 8 months ago

Hello!

Although this is closed, I found complete zeros in the clean+compiled files with flags from the NEUS survey in wgt/num CPUE and CPUA columns:

Screenshot 2023-12-10 at 17 36 13

As you can see below, the raw numbers and wgts are intact. I can generate new columns with raw values but is there a further issue with the QA/QC?

Thank you!

AquaAuma commented 8 months ago

it's because we don't have precise data for this survey of haul duration or swept area, making the cpua/cpue variables not that interesting. I guess it could be replaced with NAs rather than 0. See here: https://github.com/AquaAuma/FishGlob_data/tree/main/metadata_docs#northeast-us---neus

mpinsky commented 8 months ago

I guess NA does make more sense than 0, since it would more clearly be "not available" rather than a true zero.

LiamMacNeil commented 8 months ago

Thank you! More scrupulous reading on my part would have done the trick.

zoekitchel commented 8 months ago

I agree that NAs would make more sense!

On Tue, Dec 12, 2023 at 4:32 AM Liam MacNeil @.***> wrote:

Thank you! More scrupulous reading on my part would have done the trick.

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