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ArcInstitute / ScreenPro2

Flexible analysis of high-content CRISPR screening
https://screenpro2.rtfd.io
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Function to find and filter out low counts #16

Closed abearab closed 6 months ago

abearab commented 7 months ago

root – https://github.com/GilbertLabUCSF/ScreenPro2/issues/28

abearab commented 6 months ago

https://github.com/mhorlbeck/ScreenProcessing/blob/master/experiment_config_file_BLANK.txt

#############################################################
##                     Filter Settings                     ##
#############################################################
[filter_settings]
#Do you require greater than or equal to the minimum reads
#for both experiments in a comparison or either experiment?
#Default is either, other option is both
filter_type = either
minimum_reads = 40