ArcInstitute / ScreenPro2

Flexible analysis of high-content CRISPR screening
https://screenpro2.rtfd.io
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pytest fails without a clear reason #24

Closed abearab closed 9 months ago

abearab commented 9 months ago

I updated environment file and then, this action is failing even with an stable environment created – https://github.com/ArcInstitute/ScreenPro2/actions/workflows/python-package.yml

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Also, my local pytest is passing so I'm not sure what is happening! image

@nick-youngblut do you have any thoughts about this?

nick-youngblut commented 9 months ago

@abearab it's likely an issue with the numba version. A thread on the topic: https://github.com/openai/whisper/discussions/1103

abearab commented 9 months ago

@nick-youngblut Awesome!

https://github.com/ArcInstitute/ScreenPro2/commit/5ca8a1caf0f6d0f035bd204730992b9b27a5b624 – I added numba to be installed with pip and the test is now passed! Thanks 🙏