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Arcadia-Science
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2022-tx-not-in-gx
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rarefy to equal sequencing depth?
#10
taylorreiter
opened
1 year ago
1
estimate how heterozygosity (which impacts subtraction outcomes) by subtraction transcriptomes from transcriptomes
#9
taylorreiter
opened
1 year ago
0
Test data set: octopus RNA editing
#8
taylorreiter
opened
1 year ago
0
Test data set: porcine tissue-specific RNA editing
#7
taylorreiter
opened
1 year ago
0
create a `core.snakefile` that records only the core pipeline
#6
taylorreiter
opened
1 year ago
0
Build a 100k cover db of all genomes and subtract using that instead of organism-specific databases?
#5
taylorreiter
opened
1 year ago
2
Removing contamination (phix, illumina adapters, microbes)
#4
taylorreiter
opened
1 year ago
0
Thoughts on dealing with heterozygosity between genome of transcriptome sample and reference genome
#3
taylorreiter
opened
1 year ago
0
paper: ROP: dumpster diving in RNA sequencing to find the source of 1 trillion reads across diverse adult human tissues
#2
taylorreiter
opened
1 year ago
0
Start a test pipeline for subtracting genomes from transcriptomes in eukaryotes
#1
taylorreiter
closed
1 year ago
2