Small PR to clean up environment

PR checklist

[x] Tag the issue(s) or milestones this PR fixes (e.g. Fixes #123, Resolves #456).
[x] Describe the changes you've made.
[x] Describe any tests you have conducted to confirm that your changes behave as expected.
[x] If you've added new software dependencies, make sure that those dependencies are included in the appropriate conda environments.
[x] If you've added new functionality, make sure that the documentation is updated accordingly.
[x] If you encountered bugs or features that you won't address, but should be addressed eventually, create new issues for them.

cleans up envs, removing software the repo no longer uses and adding a few missing ones. I plan for this to be my last PR before releasing the repo!