Single copy marker searches to aid manual binning

[elizabethmcd]

Usually for manual binning, want:

• Assembly
• Differential coverage table > currently set up for mapping from just one sample and not time-series
• Taxonomy of contigs
• Single copy markers

Then pass to anvi'o or mmgenome2 for manual binning and have all that information handy. Current modules and plans include the first 3 but not the last item - usually got this with anvi'o HMM search, but depending on how the end file needs to be formatted could use something else probably

[elizabethmcd]

Related to this, maybe also adding a module for ID ribosomal markers that team wants to make FISH probes from to automate that

[elizabethmcd]

outside of scope of this workflow, add to future binning workflow