search

Arcadia-Science / metagenomics

A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies
MIT License
34 stars 2 forks source link

fix samplesheet input script #34

Closed elizabethmcd closed 1 year ago

elizabethmcd commented 1 year ago

fix this from what the nf-core module installs to the solution in hifi2genome

elizabethmcd commented 1 year ago

Mostly just wanted the _T1 suffix removed because it adds some confusion but kept the script to check for duplicate samplenames, but needed to keep the reads check since it could have either one or two paired-end fastqs depending on Illumina or Nanopore input, addressed in #56