This PR adds a script to rename contigs after assembly to be more uniform and not break downstream steps (metaspades gives a crazy format for contig names that messes things up later on).
I do not know for the life of me why linting was previously breaking when I ran black . each time but seems to be fine now.
This PR adds a script to rename contigs after assembly to be more uniform and not break downstream steps (metaspades gives a crazy format for contig names that messes things up later on). I do not know for the life of me why linting was previously breaking when I ran
black .each time but seems to be fine now.