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Arcadia-Science / metagenomics

A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies
MIT License
34 stars 2 forks source link

Reports with sourmashconsumr #53

Open elizabethmcd opened 1 year ago

elizabethmcd commented 1 year ago

Description of feature

Currently the pipeline spits out a lot of files from sourmash for signatures, compare, gather, and taxannotate results, can make automated reports/figures with the sourmashconsumr R package, but need some other things like either docker images/conda packages to happen in the background to ensure good CI testing