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Arcadia-Science / noveltree

NovelTree is a highly parallelized and computationally efficient phylogenomic workflow that infers gene families, gene family trees, species trees, and gene family evolutionary history.
GNU Affero General Public License v3.0
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Make bin/ scripts executable and fix their invocations #22

Closed mertcelebi closed 1 year ago

mertcelebi commented 1 year ago

This is one of the fixes we needed to make to make the pipeline run on Tower.

mertcelebi commented 1 year ago

Yup just ran chmod u+x on the scripts and the 100644 -> 100755 represents the file permission changes.

This could've been caught locally too since the correct calls to the bin/ scripts shouldn't be like this Rscript $projectDir/bin/... but just the script name (this only works if the script is executable).