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Arcadia-Science / noveltree

NovelTree is a highly parallelized and computationally efficient phylogenomic workflow that infers gene families, gene family trees, species trees, and gene family evolutionary history.
GNU Affero General Public License v3.0
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singularity container support #99

Open mliannholland opened 8 months ago

mliannholland commented 8 months ago

Description of feature

My university computing cluster does not support Docker containers and instead uses singularity. Would it be possible to add a singularity container engine for this pipeline?

austinhpatton commented 8 months ago

HI @mliannholland - thank for your interest in NovelTree!

I'm sorry to hear your university does not support docker containers - it seems like this is not too uncommon, since you're not the first to have brought this up. Given how common this issue is, we'll definitely be looking into making the workflow be compatible with singluarity in the future! In the interim, please let us know if there are any other changes or new functionalities you'd like to see implemented!

Thanks again, Austin