Arcadia-Science / prehgt

A pipeline for lightweight screening of Eukaryotic genomes and transcriptomes for recent HGT
MIT License
13 stars 6 forks source link

S. pombe positive control #1

Closed taylorreiter closed 1 year ago

taylorreiter commented 1 year ago

Genome: https://www.ncbi.nlm.nih.gov/genome/14?genome_assembly_id=22534 GenBank FTP: https://ftp.ncbi.nlm.nih.gov/genomes/genbank/fungi/Schizosaccharomyces_pombe/latest_assembly_versions/GCA_000002945.2_ASM294v2/ GFF download link: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/945/GCF_000002945.1_ASM294v2/GCF_000002945.1_ASM294v2_genomic.gff.gz proteins download link: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/945/GCF_000002945.1_ASM294v2/GCF_000002945.1_ASM294v2_protein.faa.gz paper: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3131103/ supplementary table link (S17): Supp Tables (download link)