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Arcadia-Science / prehgt

A pipeline for lightweight screening of Eukaryotic genomes and transcriptomes for recent HGT
MIT License
12 stars 6 forks source link

remove eggnog annotation in favor of kofamscan #16

Closed taylorreiter closed 1 year ago

taylorreiter commented 1 year ago

which will allow us to continue to use an MIT license, while eggnog would make use inherit an AGPL for the entire repo.

I will provide a tutorial that shows how to get eggnog annotations for HGT candidates.

taylorreiter commented 1 year ago

Make sure kegg orthologs have the name & description of the ortholog, as well as the names of pathways the ortholog is involved in

taylorreiter commented 1 year ago

perk, the database is only 1.3Gb

https://www.genome.jp/ftp/db/kofam/ko_list.gz (809K) https://www.genome.jp/ftp/db/kofam/profiles.tar.gz (1.3G)

taylorreiter commented 1 year ago

Addressed in #25