Arcadia-Science / prehgt

A pipeline for lightweight screening of Eukaryotic genomes and transcriptomes for recent HGT
MIT License
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Add a step to combine all of the results into one file #46

Closed taylorreiter closed 1 year ago

taylorreiter commented 1 year ago

PR introduces code to combine all of the genus-level results TSV files into one big final TSV file. Right now it's just named "all_results.tsv". Eventually I might parameterize it so that it has a user-supplied prefix. But For now this is good enough I think!

This PR is a little dumb because I renamed a file, bin/combine_results.R to bin/combine_results_genus.R, and then made a new file called bin/combine_results.R. Git got confused so there's a big weird diff. The file bin/combine_results_genus.R is unchanged except for it's name and does not need to be reviewed.