Out of curiosity after reviewing the recent PR I wanted to test the pipeline with nextflow run Arcadia-Science/seqqc -profile test,docker --outdir test and got the error:
Project `Arcadia-Science/seqqc` is currently stickied on revision: main -- you need to explicitly specify a revision with the option `-r` in order to use it
Using the command nextflow run Arcadia-Science/seqqc -profile test,docker -outdir test -r main fixes this.
However, this will either affect how we create templates or put in the documentation how to run the pipeline. Either:
Go back to master branch convention since that's how nf-core create makes pipelines and evidently how nextflow run expects it
Just write in the documentation to include the -r main flag
Out of curiosity after reviewing the recent PR I wanted to test the pipeline with
nextflow run Arcadia-Science/seqqc -profile test,docker --outdir test
and got the error:Using the command
nextflow run Arcadia-Science/seqqc -profile test,docker -outdir test -r main
fixes this.However, this will either affect how we create templates or put in the documentation how to run the pipeline. Either:
master
branch convention since that's hownf-core create
makes pipelines and evidently hownextflow run
expects it-r main
flag