Arcadia-Science / sourmashconsumr

Working with the outputs of sourmash in R
https://arcadia-science.github.io/sourmashconsumr/
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add functions for rarefaction for groups of signatures using vegan #14

Closed taylorreiter closed 1 year ago

taylorreiter commented 1 year ago

like used here (note all of these links are to the specaccum branch which will be deleted after https://github.com/Arcadia-Science/2022-mtx-not-in-mgx-pairs/pull/9 is merged):

Only makes sense to run signatures with abundances calculated from reads. Also only really makes sense when it's run on many signatures from the same sample.

requires signatures to be read into a data frame (see #4)

taylorreiter commented 1 year ago

Signatures read in in #16. Rarefaction curves implemented in #17.

taylorreiter commented 1 year ago

closed by #17