summary_level to agglomeration_level or taxglom_level: summary level isn't clear. it should be made more clear this is for agglomeration.
switch taxonomy_annotate_tibble to taxonomy_annotate_df:
naming it a tibble is sort of annoying, plus a tibble is technically still a data frame. Changing this would make it match with how signature data frames are referred to (signatures_df). Plus df is shorter than tibble, which is nice.
change taxonomy_annotate_to_metacoder() to from_taxonomy_annotate_to_metacoder()
taylorreiter
commented
2 years ago
summary_leveltoagglomeration_levelortaxglom_level: summary level isn't clear. it should be made more clear this is for agglomeration.taxonomy_annotate_tibbletotaxonomy_annotate_df: naming it a tibble is sort of annoying, plus a tibble is technically still a data frame. Changing this would make it match with how signature data frames are referred to (signatures_df). Plusdfis shorter thantibble, which is nice.taxonomy_annotate_to_metacoder()tofrom_taxonomy_annotate_to_metacoder()