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1 year ago Codecov Report
:exclamation: No coverage uploaded for pull request base (
main@00e1e57). Click here to learn what that means. Patch has no changes to coverable lines.
Additional details and impacted files
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Inspired by the upset plot here: https://github.com/Arcadia-Science/2022-prjna853785-sourmash/blob/main/notebooks/20220815-visualize-sourmash-taxonomy-results.ipynb
Improvements include coloring the intersections bars by taxonomic level and optional taxonomic agglomeration to any taxonomic rank.
I did some refactoring in this PR too -- the few files where you see whole functions or tests disappearing actually went into different files. The metacoder stuff was simplified when I pulled out the tax agglomeration stuff to it's own function. I also wrote a bunch of utility functions for working with upset plots. These will work on any upset compliant data frame, not just the ones made in this package, so I thought they should all be pulled out and placed together and tested together.