Closed taylorreiter closed 1 year ago
https://taylorreiter.github.io/2022-07-28-From-raw-metagenome-reads-to-phyloseq-taxonomy-table-using-sourmash-gather-and-sourmash-taxonomy/
https://github.com/sourmash-bio/sourmash/issues/2289
sourmash_taxonomy_annotate_to_phyloseq()
read_sourmash_taxonomy_annotate()
sourmash_taxonomy_annotate_to_tax_table()
sourmash_taxonomy_annotate_to_count_table()
Make sure tests for both gtdb and genbank like metacoder does
addressed in #27
https://taylorreiter.github.io/2022-07-28-From-raw-metagenome-reads-to-phyloseq-taxonomy-table-using-sourmash-gather-and-sourmash-taxonomy/
https://github.com/sourmash-bio/sourmash/issues/2289
sourmash_taxonomy_annotate_to_phyloseq()
read_sourmash_taxonomy_annotate()
sourmash_taxonomy_annotate_to_tax_table()
sourmash_taxonomy_annotate_to_count_table()