Arcadia-Science / sourmashconsumr

Working with the outputs of sourmash in R
https://arcadia-science.github.io/sourmashconsumr/
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add functions for importing output of `sourmash taxonomy annotate` to phyloseq object #3

Closed taylorreiter closed 1 year ago

taylorreiter commented 1 year ago

https://taylorreiter.github.io/2022-07-28-From-raw-metagenome-reads-to-phyloseq-taxonomy-table-using-sourmash-gather-and-sourmash-taxonomy/

https://github.com/sourmash-bio/sourmash/issues/2289

taylorreiter commented 1 year ago

Make sure tests for both gtdb and genbank like metacoder does

taylorreiter commented 1 year ago

addressed in #27