Closed taylorreiter closed 1 year ago
This PR adds three functions that will read some of the outputs generated by sourmash:
sourmash gather
sourmash compare
sourmash taxonomy annotate
As much as possible, I tried to follow conventions of package development laid out in this guide: https://r-pkgs.org/
Some of the files are automatically generated or edited by devtools::document(), roxygen2, and usethis::use_this(). This includes
devtools::document()
roxygen2
usethis::use_this()
DESCRIPTION
NAMESPACE
man/*RD
R/utils-pipe.R
I've punted on functions for
sourmash sig describe
sourmash taxonomy metagenome
sourmash search
sourmash prefetch
I'll tackle these later, but the functions in this PR are the ones I need to tackle #3 and #2 so I'm starting here.
@ctb & @luizirber you might be interested in this PR.
This PR adds three functions that will read some of the outputs generated by sourmash:
sourmash gather
sourmash compare
sourmash taxonomy annotate
As much as possible, I tried to follow conventions of package development laid out in this guide: https://r-pkgs.org/
Some of the files are automatically generated or edited by
devtools::document()
,roxygen2
, andusethis::use_this()
. This includesDESCRIPTION
NAMESPACE
man/*RD
R/utils-pipe.R
I've punted on functions for
sourmash sig describe
sourmash taxonomy metagenome
sourmash search
andsourmash prefetch
.I'll tackle these later, but the functions in this PR are the ones I need to tackle #3 and #2 so I'm starting here.
@ctb & @luizirber you might be interested in this PR.