Arcadia-Science / sourmashconsumr

Working with the outputs of sourmash in R
https://arcadia-science.github.io/sourmashconsumr/
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add helpful error message for when file path doesnt exist and give hint for sysglob for multiple files #61

Closed taylorreiter closed 1 year ago

taylorreiter commented 1 year ago

Addresses #49. Came up when @ecpierce was running through the vignette with her own samples.

codecov-commenter commented 1 year ago

Codecov Report

Base: 91.97% // Head: 92.00% // Increases project coverage by +0.03% :tada:

Coverage data is based on head (18f199f) compared to base (4bc6962). Patch coverage: 100.00% of modified lines in pull request are covered.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #61 +/- ## ========================================== + Coverage 91.97% 92.00% +0.03% ========================================== Files 8 8 Lines 598 613 +15 ========================================== + Hits 550 564 +14 - Misses 48 49 +1 ``` | [Impacted Files](https://codecov.io/gh/Arcadia-Science/sourmashconsumr/pull/61?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Arcadia-Science) | Coverage Δ | | |---|---|---| | [R/read\_sourmash\_outputs.R](https://codecov.io/gh/Arcadia-Science/sourmashconsumr/pull/61?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Arcadia-Science#diff-Ui9yZWFkX3NvdXJtYXNoX291dHB1dHMuUg==) | `100.00% <100.00%> (ø)` | | | [R/plot\_taxonomy\_annotate.R](https://codecov.io/gh/Arcadia-Science/sourmashconsumr/pull/61?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Arcadia-Science#diff-Ui9wbG90X3RheG9ub215X2Fubm90YXRlLlI=) | `92.96% <0.00%> (-0.30%)` | :arrow_down: | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Arcadia-Science). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Arcadia-Science)

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