Closed campmlc closed 1 year ago
Why is the proposed value fungi: microbiome
but the definition clearly indicates that more than fungi are involved? Should we also have:
bacteria: microbiome virus: microbiome etc.
or should this just be microbiome (probably ONLY used in examined for) and whatever is detected gets a more detailed attribute value?
My bad - I was originally going to request fungi: mycobiome, but it makes more sense to me to use the broader term and use methods to distinguish. I'll fix the typos.
On Wed, May 10, 2023, 7:54 AM Teresa Mayfield-Meyer < @.***> wrote:
- [EXTERNAL]*
Why is the proposed value fungi: microbiome but the definition clearly indicates that more than fungi are involved? Should we also have:
bacteria: microbiome virus: microbiome etc.
or should this just be microbiome (probably ONLY used in examined for) and whatever is detected gets a more detailed attribute value?
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And I agree that for these types of broad screenings the more general terms should be used in examined for and whatever is detected gets a more detailed attribute value.
For specific screenings, eg for a specific virus, the examined for and detected will be the same.
Approved by code table committee 5 May 2023.
Initial Request Add the term "microbiome" to the Examined_Detected code table to aid in the migration of legacy data.
_Proposed Value: microbiome
_Proposed Definition: The microbiome is a community of microorganisms (microbiota) that can usually be found living together in any given habitat, such as in the digestive tract, on the skin, or in a cave deposit; includes bacteria, archaea, fungi, algae, small protists and potentially viruses and other genetic elements. For specific communities, such as fungal mycobiomes, include detail in Methods. https://en.wikipedia.org/wiki/Microbiome
_Context: This is a new attribute value to capture current research results and pathogen studies using museum specimens. Data are available in publications referencing voucher specimens.
_Table: https://arctos.database.museum/info/ctDocumentation.cfm?table=ctexamined_detected
_Priority: High
_Available for Public View: Yes
Project: Add the issue to the Code Table Management Project.
Discussion: Please reach out to anyone who might be affected by this change. Leave a comment or add this to the Committee agenda if you believe more focused conversation is necessary.
@jldunnum @jtgiermakowski https://github.com/orgs/ArctosDB/teams/arctos-code-table-administrators
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