Code Table Request - change part name serum to blood serum

[happiah-madson]

Initial Request

Goal

Describe what you're trying to accomplish. This is the only necessary step to start this process. The Committee is available to assist with all other steps. Please clearly indicate any uncertainty or desired guidance if you proceed beyond this step.

Refer to blood serum consistently.

Context

Describe why this new value is necessary and existing values are not.

serum exists (https://arctos.database.museum/info/ctDocumentation.cfm?table=ctspecimen_part_name#serum) but explicitly says that best practice is to use 'blood serum.' However, the only 'blood serum' value is a combination term that includes muscle (https://arctos.database.museum/info/ctDocumentation.cfm?table=ctspecimen_part_name#blood_serum__muscle). We would like to be able to use blood serum by itself!

Table

Code Tables are http://arctos.database.museum/info/ctDocumentation.cfm. Link to the specific table or value. This may involve multiple tables and will control datatype for Attributes. OtherID requests require BaseURL (and example) or explanation. Please ask for assistance if unsure.

https://arctos.database.museum/info/ctDocumentation.cfm?table=ctspecimen_part_name

Proposed Value

Proposed new value. This should be clear and compatible with similar values in the relevant table and across Arctos.

blood serum

Proposed Definition

Clear, complete, non-collection-type-specific functional definition of the value. Avoid discipline-specific terminology if possible, include parenthetically if unavoidable.

Blood serum is the fluid and solute component of blood which does not play a role in clotting. https://en.wikipedia.org/wiki/Serum_(blood)

Collection type

_Some code tables contain collection-type-specific values. collection_cde may be found from https://arctos.database.museum/home.cfm_

n/a

Attribute Extras

Attribute data type

If the request is for an attribute, what values will be allowed? free-text, categorical, or number+units depending upon the attribute (TBA)

n/a

Attribute controlled values

If the values are categorical (to be controlled by a code table), add a link to the appropriate code table. If a new table or set of values is needed, please elaborate.

n/a

Attribute units

if numerical values should be accompanied by units, provide a link to the appropriate units table.

n/a

Part preservation attribute affect on "tissueness"

if a new part preservation is requested, please add the affect it would have on "tissueness": No Influence, Allows, or Denies

no influence

Priority

Please describe the urgency and/or choose a priority-label to the right. You should expect a response within two working days, and may utilize Arctos Contacts if you feel response is lacking.

Example Data

Requests with clarifying sample data are generally much easier to understand and prioritize. Please attach or link to any representative data, in any form or format, which might help clarify the request.

Available for Public View

Most data are by default publicly available. Describe any necessary access restrictions.

Yes

Helpful Actions

• [x] Add the issue to the Code Table Management Project.

• [x] Please reach out to anyone who might be affected by this change. Leave a comment or add this to the Committee agenda if you believe more focused conversation is necessary.

@ArctosDB/arctos-code-table-administrators @falco-rk @Jegelewicz

Approval

All of the following must be checked before this may proceed.

_The How-To Document should be followed. Pay particular attention to terminology (with emphasis on consistency) and documentation (with emphasis on functionality). No person should act in multiple roles; the submitter cannot also serve as a Code Table Administrator, for example._

• [x] Code Table Administrator[1] - check and initial, comment, or thumbs-up to indicate that the request complies with the how-to documentation and has your approval
• [x] Code Table Administrator[2] - check and initial, comment, or thumbs-up to indicate that the request complies with the how-to documentation and has your approval
• [x] DBA - The request is functionally acceptable. The term is not a functional duplicate, and is compatible with existing data and code.
• [x] DBA - Appropriate code or handlers are in place as necessary. (ID_References, Media Relationships, Encumbrances, etc. require particular attention)

Rejection

If you believe this request should not proceed, explain why here. Suggest any changes that would make the change acceptable, alternate (usually existing) paths to the same goals, etc.

1. Can a suitable solution be found here? If not, proceed to (2)
2. Can a suitable solution be found by Code Table Committee discussion? If not, proceed to (3)
3. Take the discussion to a monthly Arctos Working Group meeting for final resolution.

Implementation

Once all of the Approval Checklist is appropriately checked and there are no Rejection comments, or in special circumstances by decree of the Arctos Working Group, the change may be made.

• [ ] Review everything one last time. Ensure the How-To has been followed. Ensure all checks have been made by appropriate personnel.

• [ ] Add or revise the code table term/definition as described above. Ensure the URL of this Issue is included in the definition. URLs should be included as text, separated by spaced pipes. Do not include HTML in definitions.

Close this Issue.

DO NOT modify Arctos Authorities in any way before all points in this Issue have been fully addressed; data loss may result.

Special Exemptions

In very specific cases and by prior approval of The Committee, the approval process may be skipped, and implementation requirements may be slightly altered. Please note here if you are proceeding under one of these use cases.

1. Adding an existing term to additional collection types may proceed immediately and without discussion, but doing so may also subject users to future cleanup efforts. If time allows, please review the term and definition as part of this step.
2. The Committee may grant special access on particular tables to particular users. This should be exercised with great caution only after several smooth test cases, and generally limited to "taxonomy-like" data such as International Commission on Stratigraphy terminology.

[mkoo]

I favor adding blood serum and converting the "serum" parts to the new term since that is likely what is meant. In fact, a quick check of records with part = serum shows that it was originally called 'blood serum' in some collections (https://arctos.database.museum/guid/ASNHC:Mamm:12506)

checked.

[campmlc]

I support this as well. I'm not sure why it was converted, but the code table for "serum" currently suggests using "blood serum" which doesn't exist except as "blood serum, muscle". I also support converting legacy "serum" values for MSB - but we should probably get a csv download first for affected collections to see if there are any other use cases that should be excluded.

[happiah-madson]

Just checking in on this request!

[campmlc]

@dustymc

[Jegelewicz]

blood serum has been added to the code table and use granted to OGL:Genomic , ASNHC:Mamm, DGR:Bird, MSB:Bird, MSB:Fish, MSB:Mamm.

Needs to be added for DMNS:Mamm, UAM:Mamm (I do not have access).

[Jegelewicz]

@happiah-madson you should be able to use this now.

[Jegelewicz]

All ASNHC:Mamm records manually changed and serum removed from their part list.

[dustymc]

temp_s.csv.zip