Closed Jegelewicz closed 8 months ago
This feels overloaded as a way to discuss specific terms, but it's a handy way to daylight and document a fundamental aspect of this. The two possibilities which have been suggested are
I can see usability benefits to either approach. The biggest (assuming we can do a good job with search terms) is probably for data entry - they may eventually be required to pick from at least 60 instars, for example, which will very likely lead to entry errors. (But maybe fewer than attempting a free-text assertion would create.)
Allowing collections to select specific terms will somewhat mitigate this - an insect collection that doesn't have any 6+ instar data can exclude those ~55 terms while still including the ~5 they actually use, a different insect collection can pick a different set of assertable terms.
This also suggests a pattern for the term - surely the "most everything" model will eventually lead to lots of "1st ....." terms, so "instar 1" rather than '1st instar' might be more accessible. (Or confusing: this is a consideration, not a suggestion - and it's part of why I think approving specific terms here, or en masse in general, would be a mistake).
I believe @ebraker likes the many-terms approach, and my thoughts are certainly ambivalent enough to hop on that bandwagon.
@Jegelewicz @ccicero @ebraker @Nicole-Ridgwell-NMMNHS thoughts/elaborations/whatever?
I believe GBIF has more or less gone the other way; their examples include relatively few "data" terms and lots of 'metadata' terms within them. That is,
larvae [lang=en, source=]
tadpole [lang=en, source=]
polliwog [lang=en, source=]
pollywog [lang=en, source=]
polliwig [lang=en, source=]
polewig [lang=en, source=]
polwig [lang=en, source=]
planula [lang=en, source=]
nauplius [lang=en, source=]
zoea [lang=en, source=]
nymph [lang=en, source=]
caterpillar [lang=en, source=]
grub [lang=en, source=]
maggot [lang=en, source=]
wriggler [lang=en, source=]
trochophore [lang=en, source=]
veliger [lang=en, source=]
glochidium [lang=en, source=]
ammocoete [lang=en, source=]
leptocephalus [lang=en, source=]
bipinnaria [lang=en, source=]
caterpillar [lang=en, source=]
grub [lang=en, source=]
maggot [lang=en, source=]
are all "search terms" for "larva." (And so if we're going in the opposite direction, maybe their definitions aren't great for us to include?)
I agree that we should take these term by term using this issue as a guide. I suggest we start with adult and move on from there one at a time?
I got lost, not sure how to proceed with this.
https://github.com/ArctosDB/arctos/issues/7032 I thought was ready, but now there's a conflict and I don't know if I need to go with https://github.com/ArctosDB/arctos/issues/7032#issuecomment-1877923223 or https://github.com/ArctosDB/arctos/issues/7032#issuecomment-1984749832 or something else.
Beyond that, I think we're all opposed to getting stuck in the inbetweens again, so this would also need updated for kinda everybody....
guid_prefix | count
--------------+-------
UCM:Obs | 2
ALMNH:Ento | 1
NMMNH:Paleo | 1
NMU:Para | 7
ASUMZ:Invert | 559
UTEP:HerpOS | 20
CSULB:Herp | 7
DMNS:Para | 15
UCSC:Herp | 2
UMZM:Para | 1
OWU:Inv | 1
UCM:Fish | 1
CHAS:Inv | 2
UWZM:Herp | 222
HWML:Para | 5501
UAM:Herp | 3
UWYMV:Herp | 19
MLZ:Fish | 6
LINGU:Herp | 65
CHAS:Ento | 37
UAMObs:Ento | 309
KNWR:Ento | 39
MVZ:Herp | 11848
UNCG:Para | 57
MSB:Herp | 966
MSB:Host | 11
NMMNH:Ento | 3
BYU:Herp | 58
OWU:Fish | 3
CHAS:Herp | 89
UWBM:Herp | 348
UTEP:Herp | 268
OGL:Genomic | 344
UNR:Fish | 1
UNR:Herp | 70
DMNS:Inv | 2
PSM:Paleo | 57
USNPC:Para | 63
UMNH:Herp | 7
UAM:Ento | 7903
UCM:Herp | 244
APSU:Fish | 22
OWU:Amph | 1
MSB:Para | 3717
APSU:Herp | 22
when the new value is added to the code table.
Here's my start of an issue, might eventually be handy.
Initially, https://github.com/ArctosDB/arctos/issues/7032
No appropriate value
https://arctos.database.museum/info/ctDocumentation.cfm?table=ctlife_stage
larva
The immature form of an animal.
(https://arctos.database.museum/info/ctDocumentation.cfm?table=ctage_class#larva is too specific, https://rs.gbif.org/vocabulary/gbif/life_stage.xml wanders around, I attempted to simplify - better definitions most welcome!)
Para
http://rs.gbif.org/vocabulary/gbif/life_stage/larva
larvae
tadpole
polliwog
pollywog
polliwig
polewig
polwig
planula
nauplius
zoea
nymph
caterpillar
grub
maggot
wriggler
trochophore
veliger
glochidium
ammocoete
leptocephalus
bipinnaria
caterpillar
grub
maggot
@Jegelewicz @mkoo help?
we aren't stuck, we just need to do things in the proper order. I will create the issue to unblock that one.
Next step should be https://github.com/ArctosDB/arctos/issues/7521
The "core"/straight-across terms in the initial comment are done, I'm closing this.
We still need to find a migration path for anything left in age class, I'll try to make sure everything has an Issue.
Banner added to inform users:
The following catalog record attributes that were formally recorded as age class should now be recorded as life stage: 1st instar, 2nd instar, 3rd instar, 4th instar, 5th instar, adult, embryo, juvenile, larva, pupa, and subadult. For more information see https://github.com/ArctosDB/arctos/issues/7298
Hello, I would like to download this 3D Model : https://sketchfab.com/3d-models/chinchilla-lanigera-msbmamm101524-a58d3467f8a3499e983839548bfde128 but my computer is identified as having malicious software. I don't understand. It's for a educational project. Can you help me ? Thank you
UWYMV is ok making the change. Life stage probably makes more sense for our tadpoles and other non-adult herps.
Initial Request
Goal
Describe what you're trying to accomplish. This is the only necessary step to start this process. The Committee is available to assist with all other steps. Please clearly indicate any uncertainty or desired guidance if you proceed beyond this step.
Place terms that are currently in age class in the new life stage code table.
Context
Describe why this new value is necessary and existing values are not.
See https://docs.google.com/spreadsheets/d/1Yv3Lx6DtSdmh0P1cSIG6zW-DnYI6VDJpOkFcgQL6F8o/edit#gid=211205961
Table
Code Tables are http://arctos.database.museum/info/ctDocumentation.cfm. Link to the specific table or value. This may involve multiple tables and will control datatype for Attributes. OtherID requests require BaseURL (and example) or explanation. Please ask for assistance if unsure.
https://arctos.database.museum/info/ctDocumentation.cfm?table=ctlife_stage
Proposed Value
Proposed new value. This should be clear and compatible with similar values in the relevant table and across Arctos.
age class term -- adult embryo larva pupa juvenile subadult 1st instar 2nd instar 3rd instar 4th instar 5th instar
Proposed Definition
Clear, complete, non-collection-type-specific functional definition of the value. Avoid discipline-specific terminology if possible, include parenthetically if unavoidable.
Collection type
_Some code tables contain collection-type-specific values.
collection_cde
may be found from https://arctos.database.museum/home.cfm_Attribute Extras
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