ArctosDB / arctos

Arctos is a museum collections management system
https://arctos.database.museum
Apache License 2.0
59 stars 13 forks source link

Code Table Request - part code table cleanup: sternal #7753

Open Jegelewicz opened 2 months ago

Jegelewicz commented 2 months ago

Goal

Describe what you're trying to accomplish. This is the only necessary step to start this process. The Committee is available to assist with all other steps. Please clearly indicate any uncertainty or desired guidance if you proceed beyond this step.

Remove confusing or duplicate part names

Context

Describe why this new value is necessary and existing values are not.

Sternum and sternal are overlapping and people won't find what they are looking for, in addition, sternal also exists in the part modifier table.

Sternal is only used in four records:

https://arctos.database.museum/guid/UTEP:ES:32-143 https://arctos.database.museum/guid/UTEP:ES:60-31 https://arctos.database.museum/guid/UAM:ES:12835 https://arctos.database.museum/guid/UAM:ES:13436

For the UTEP records, I changed the parts to sternum and added the part modifier sternal, if we can change the UAM parts, the part would no longer be in use and could be removed from the code table.

Table

Code Tables are http://arctos.database.museum/info/ctDocumentation.cfm. Link to the specific table or value. This may involve multiple tables and will control datatype for Attributes. OtherID requests require BaseURL (and example) or explanation. Please ask for assistance if unsure.

https://arctos.database.museum/info/ctDocumentation.cfm?table=ctspecimen_part_name

Proposed Value

Proposed new value. This should be clear and compatible with similar values in the relevant table and across Arctos.

sternal

Proposed Definition

Clear, complete, non-collection-type-specific functional definition of the value. Avoid discipline-specific terminology if possible, include parenthetically if unavoidable.

N/A - remove from the code table

Collection type

_Some code tables contain collection-type-specific values. collection_cde may be found from https://arctos.database.museum/home.cfm_

Attribute Extras

Attribute data type

If the request is for an attribute, what values will be allowed? free-text, categorical, or number+units depending upon the attribute (TBA)

Attribute controlled values

If the values are categorical (to be controlled by a code table), add a link to the appropriate code table. If a new table or set of values is needed, please elaborate.

Attribute units

if numerical values should be accompanied by units, provide a link to the appropriate units table.

Part preservation attribute affect on "tissueness"

if a new part preservation is requested, please add the affect it would have on "tissueness": No Influence, Allows, or Denies

Priority

Please describe the urgency and/or choose a priority-label to the right. You should expect a response within two working days, and may utilize Arctos Contacts if you feel response is lacking.

let's not let this get used again

Example Data

Requests with clarifying sample data are generally much easier to understand and prioritize. Please attach or link to any representative data, in any form or format, which might help clarify the request.

Available for Public View

Most data are by default publicly available. Describe any necessary access restrictions.

Helpful Actions

@ArctosDB/arctos-code-table-administrators @mvzhuang

Approval

All of the following must be checked before this may proceed.

_The How-To Document should be followed. Pay particular attention to terminology (with emphasis on consistency) and documentation (with emphasis on functionality). No person should act in multiple roles; the submitter cannot also serve as a Code Table Administrator, for example._

Rejection

If you believe this request should not proceed, explain why here. Suggest any changes that would make the change acceptable, alternate (usually existing) paths to the same goals, etc.

  1. Can a suitable solution be found here? If not, proceed to (2)
  2. Can a suitable solution be found by Code Table Committee discussion? If not, proceed to (3)
  3. Take the discussion to a monthly Arctos Working Group meeting for final resolution.

Implementation

Once all of the Approval Checklist is appropriately checked and there are no Rejection comments, or in special circumstances by decree of the Arctos Working Group, the change may be made.

Close this Issue.

DO NOT modify Arctos Authorities in any way before all points in this Issue have been fully addressed; data loss may result.

Special Exemptions

In very specific cases and by prior approval of The Committee, the approval process may be skipped, and implementation requirements may be slightly altered. Please note here if you are proceeding under one of these use cases.

  1. Adding an existing term to additional collection types may proceed immediately and without discussion, but doing so may also subject users to future cleanup efforts. If time allows, please review the term and definition as part of this step.
  2. The Committee may grant special access on particular tables to particular users. This should be exercised with great caution only after several smooth test cases, and generally limited to "taxonomy-like" data such as International Commission on Stratigraphy terminology.
Jegelewicz commented 2 months ago

Patrick,

In an attempt to normalize our part names and remove confusing information, we are looking to remove sternal from the part name list in Arctos. Your collection is the only one using this term. Please see the Github issue here.

If you have a strong objection to this change, please comment there, otherwise let us know if we can make this change for you, or if you make the change, let us know so that we can remove the term from the code table.

Thank you!

Teresa J. Mayfield-Meyer

Jegelewicz commented 2 months ago

I don’t have strong objections, but wonder why this is an issue. I read the Github text. My responses:

1) It is a legit anatomical name (a bone found in critters like duck-billed dinosaurs). 2) It is NOT a sternum (which is a single midline bone in mammals; a sternal is a paired element in the shoulder girdle). 3) It is used in the peer reviewed literature; anyone looking for a sternal would not look for a sternum!

Anyway, those are my thoughts. best

Pat

Jegelewicz commented 2 months ago

Can we link sternal to an ontology? I do not find a definition for this bone in a Google search and wonder if we could use

girdle with condition = partial, part modifier = pectoral and sternal in part remark?

@Nicole-Ridgwell-NMMNHS @KatherineLAnderson thoughts?

KatherineLAnderson commented 2 months ago

Can we link sternal to an ontology? I do not find a definition for this bone in a Google search and wonder if we could use

girdle with condition = partial, part modifier = pectoral and sternal in part remark?

@Nicole-Ridgwell-NMMNHS @KatherineLAnderson thoughts?

The sternum and rib cage (including sternal ribs) are not part of the pectoral girdle, so I don't think this is accurate.

I think sternal could be changed to sternum for the UAMES specimens. Or, they could mean sternal rib (https://www.merriam-webster.com/dictionary/sternal%20rib), in which case part=rib with sternal in remark would be appropriate.

Nicole-Ridgwell-NMMNHS commented 2 months ago

Perhaps clarify that part of the reason for removing the term is usage - we are trying to remove terms with low usage. Also, even if the value is in remarks, it will still be found in part search.

KatherineLAnderson commented 2 months ago

^Sorry I missed the email response from Pat D (UAMES) above Teresa's last comment.

Obviously this is a confusing thing because I'm definitely confused about what a "sternal" even is. Can Pat provide documentation?