Filter files with chla in "delayed"

[catsch]

I tried

prof_DM_CHLA<-argo_global_bio_prof() %>% argo_filter_parameter("chla") %>% argo_filter_data_mode("delayed")

it returns 65,128 rows while there are 4010 chla profiles in "delayed" so I assume I did something wrong, any guidance to filter with parameter_data_mode ?

[catsch]

https://github.com/openjournals/joss-reviews/issues/3659

[paleolimbot]

The intention with argo_filter_data_mode() is to filter based on the filename (i.e., files that start with BD for BGC). I should definitely document this and add a argo_filter_parameter_data_mode() that properly uses the parameter_data_mode column in the index!

library(dplyr, warn.conflicts = FALSE)
library(argodata)

prof_DM_CHLA <- argo_global_bio_prof() %>%
  argo_filter_parameter("chla") %>%
  argo_filter_data_mode("delayed")
#> Loading argo_global_bio_prof()
#> Downloading 1 file from 'https://data-argo.ifremer.fr'
# all D-files
head(basename(prof_DM_CHLA$file))
#> [1] "BD1902303_001.nc" "BD1902303_002.nc" "BD1902303_003.nc" "BD1902303_004.nc"
#> [5] "BD1902303_005.nc" "BD1902303_006.nc"

^{Created on 2021-10-13 by the reprex package (v2.0.1)}

[paleolimbot]

This should now work!

library(dplyr, warn.conflicts = FALSE)
library(argodata)

# works!
argo_global_bio_prof() %>%
  argo_filter_parameter_data_mode("chla", "delayed")
#> Loading argo_global_bio_prof()
#> Downloading 1 file from 'https://data-argo.ifremer.fr'
#> # A tibble: 4,010 × 10
#>    file   date                latitude longitude ocean profiler_type institution
#>    <chr>  <dttm>                 <dbl>     <dbl> <chr>         <dbl> <chr>      
#>  1 corio… 2005-10-27 08:58:12    -16.4     -75.4 P               846 IF         
#>  2 corio… 2005-11-01 08:48:23    -16.7     -75.2 P               846 IF         
#>  3 corio… 2005-11-06 08:52:55    -16.8     -74.9 P               846 IF         
#>  4 corio… 2005-11-11 08:53:17    -16.9     -74.3 P               846 IF         
#>  5 corio… 2005-11-16 08:54:50    -16.8     -73.9 P               846 IF         
#>  6 corio… 2005-11-21 08:48:58    -16.9     -73.7 P               846 IF         
#>  7 corio… 2005-11-26 08:57:57    -17.3     -73.5 P               846 IF         
#>  8 corio… 2005-12-01 08:47:31    -17.6     -73.8 P               846 IF         
#>  9 corio… 2005-12-06 08:56:22    -17.3     -73.9 P               846 IF         
#> 10 corio… 2005-12-11 08:58:30    -17.3     -73.6 P               846 IF         
#> # … with 4,000 more rows, and 3 more variables: parameters <chr>,
#> #   parameter_data_mode <chr>, date_update <dttm>

^{Created on 2021-10-13 by the reprex package (v2.0.1)}

[catsch]

very nice !