In the Russ et al., 2021 paper you mention "For data from Hayashi et al. (GEO: 108788, SRA: SRP128071), Zeisel et al. (SRA: SRP135960), and Baek et al. (GEO: GSE130312), 10X sequence data were download from SRA in BAM format then converted to cell ranger-compatible fastq files using the 10X-provided bamtofastq tool."
As far as I can tell, the work by Baek et al., 2019 was not based on 10x Genomics tech, but SMART-SCRB according to the authors. Probably you should correct that part of the text. In addition, is there any possibility you could provide any guidance regarding the processing of this dataset?
Dear authors,
In the Russ et al., 2021 paper you mention "For data from Hayashi et al. (GEO: 108788, SRA: SRP128071), Zeisel et al. (SRA: SRP135960), and Baek et al. (GEO: GSE130312), 10X sequence data were download from SRA in BAM format then converted to cell ranger-compatible fastq files using the 10X-provided bamtofastq tool."
As far as I can tell, the work by Baek et al., 2019 was not based on 10x Genomics tech, but SMART-SCRB according to the authors. Probably you should correct that part of the text. In addition, is there any possibility you could provide any guidance regarding the processing of this dataset?
Cheers,
A