NOTE: Dependency discovery took 74 seconds during snapshot.
Consider using .renvignore to ignore files, or switching to explicit snapshots.
See ?renv::dependencies for more information.
The project is out-of-sync -- use renv::status() for details.
Loading required package: SeuratObject
Loading required package: sp
Attaching package: 'SeuratObject'
The following objects are masked from 'package:base':
intersect, t
Coarse label transfer
Reading data...
Reference data:
Error: Please run UpdateSeuratObject on your object
Execution halted
ERROR: failed to reproduce 'dvc.yaml': failed to run: Rscript src/R/label_transfer.R, exited with 1
Already tried using UpdateSeuratObject on it and still has not worked
py -m dvc repro Stage 'Download' didn't change, skipping Running stage 'LT' with command: Rscript src/R/label_transfer.R
NOTE: Dependency discovery took 74 seconds during snapshot. Consider using .renvignore to ignore files, or switching to explicit snapshots. See
?renv::dependenciesfor more information.renv::status()for details. Loading required package: SeuratObject Loading required package: spAttaching package: 'SeuratObject'
The following objects are masked from 'package:base':
Coarse label transfer Reading data... Reference data: Error: Please run UpdateSeuratObject on your object Execution halted ERROR: failed to reproduce 'dvc.yaml': failed to run: Rscript src/R/label_transfer.R, exited with 1
Already tried using UpdateSeuratObject on it and still has not worked