ArielLevineLabNINDS / SeqSeek_Classify_Full_Pipeline

Use DVC to run the full pipeline from Russ, Patterson-Cross, et al.
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ERROR: failed to reproduce 'dvc.yaml': failed to run: Rscript src/R/label_transfer.R, exited with -6 #5

Open PreshitaDave opened 2 years ago

PreshitaDave commented 2 years ago

On running the command 'python3 -m dvc repro', I get the following

Stage 'Download' didn't change, skipping
Running stage 'LT' with command: Rscript src/R/label_transfer.R dyld[57749]: Library not loaded: @rpath/libreadline.6.2.dylib Referenced from: /Users/preshitadave/opt/anaconda3/lib/R/lib/libR.dylib Reason: tried: '/Users/preshitadave/opt/anaconda3/lib/R/lib/../../libreadline.6.2.dylib' (no such file)

ERROR: failed to reproduce 'dvc.yaml': failed to run: Rscript src/R/label_transfer.R, exited with -6

I didn't face any installation errors, so I'm not entirely sure why I'm facing this error.