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Arkadiy-Garber / FeGenie

HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes
GNU Affero General Public License v3.0
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Option to output prodigal nucleotide file? #4

Closed ngilber3 closed 4 years ago

ngilber3 commented 4 years ago

Hello, I've used your tool and it works great! I was wondering if you could add an option to output a nucleotide fasta file, similar to the proteins.faa file created during the Prodigal ORF searching. I would like to do some metatranscriptome mappings to the hits, and so this option would be quite useful. Thanks!

Arkadiy-Garber commented 4 years ago

Hey there, thanks for using FeGenie! Sure thing, I can definitely add that as an additional output. I am about to release an updated version of the software, and will have that as an additional output.

Cheers, Arkadiy

Arkadiy-Garber commented 4 years ago

Ok, new version is up. The nucleotide fasta file is written to the same directory that the proteins.faa files are written to. The nucleotide fasta file is named proteins.ffn

Let me know if there are any other issues!

Thanks, Arkadiy

ngilber3 commented 4 years ago

This is great! Thanks so much!