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ArnaoutLab / diversity

Partitioned frequency- and similarity-sensitive diversity in Python
MIT License
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included rho-hat, beta-hat #59

Closed nhongphuc closed 11 months ago

nhongphuc commented 11 months ago

I made slight changes to the files metacommunity.py and components.py, so that the package computes the quantities dubbed rho-hat and beta-hat (defined in our diversity draft).

Elliot-D-Hill commented 11 months ago

We should add the notebooks/ folder to the .gitignore to keep the paper analyses separate from the package code.

nhongphuc commented 11 months ago

Hi Elliot,

The README file links to those Jupyter notebooks (in the Applications section near the bottom). So, if I add the notebooks/ folder to the .gitignore, I think that will break those links ? So maybe it's best not to add /notebooks to the .gitignore ?

Elliot-D-Hill commented 11 months ago

Yes, but it looks like the notebooks and data add about 4 million lines to the repo, so to keep the package code uncluttered I would suggest moving the notebooks and data to a separate GitHub repo (or Gist) exclusively for the paper's code. That way you can still link to them in the README.

nhongphuc commented 11 months ago

Okay, sounds good. I'll do that soon.