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ArnaoutLab
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diversity
Partitioned frequency- and similarity-sensitive diversity in Python
MIT License
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do not rely on inheritance hierarchy in scipy sparse matrix
#53
chhotii-alex
closed
1 year ago
0
not accepting csr_array for counts
#52
chhotii-alex
closed
1 year ago
1
3.11 stricter about not allowing mutable defaults
#51
chhotii-alex
closed
1 year ago
0
user should have the option to specify whether the similarity is symmetric when using a similarity function
#50
chhotii-alex
closed
9 months ago
0
Major update
#49
Elliot-D-Hill
closed
1 year ago
1
Require make_metacommunity counts input to already by pivoted
#48
Elliot-D-Hill
closed
1 year ago
0
SimilarityFromMemory subclasses
#47
Elliot-D-Hill
closed
1 year ago
0
Species and subcommunity subsetting refactor
#46
Elliot-D-Hill
closed
1 year ago
0
Pivot table refactor
#45
Elliot-D-Hill
closed
1 year ago
0
caching of subcommunity similarities SharedSimilaritySensitiveMetacommunity
#44
chhotii-alex
closed
1 year ago
0
Getting rid of @cache on some member functions
#43
chhotii-alex
closed
1 year ago
1
Sparse abundance counts refactor
#42
Elliot-D-Hill
closed
1 year ago
1
use of @cache on member functions could be a memory leak
#41
chhotii-alex
closed
1 year ago
0
Decouple extract_data_if_shared()
#40
Elliot-D-Hill
closed
1 year ago
0
Decouple SimilarityFromFunction.read_shared_features() from make_similarity()
#39
Elliot-D-Hill
closed
2 years ago
0
README is out of date
#38
Elliot-D-Hill
closed
1 year ago
0
Fix bug where species names where not properly converted to strings
#37
Elliot-D-Hill
closed
2 years ago
0
From function
#36
JasperBraun
closed
2 years ago
0
Measures refactor
#35
Elliot-D-Hill
closed
2 years ago
0
Add similarity factory, subcommunity subsetting, and pairwise metacommunities
#34
Elliot-D-Hill
closed
2 years ago
0
Pairwise split
#33
Elliot-D-Hill
closed
2 years ago
0
Add option for subsetting metacommunity
#32
JasperBraun
closed
2 years ago
0
Simple api
#31
JasperBraun
closed
2 years ago
0
Parallelize SimilarityFromFunction
#30
JasperBraun
closed
2 years ago
0
Merge OOP into main
#29
Elliot-D-Hill
closed
2 years ago
0
Add (normalized) sub-/metacommunity abundance weighted similarities t…
#28
JasperBraun
closed
2 years ago
0
URL not found error when reading data from a URL as an iterator
#27
Elliot-D-Hill
closed
2 years ago
0
test parameters.configure_arguments
#26
JasperBraun
closed
2 years ago
0
Allow url input and give control over similarity matrix chunk size.
#25
JasperBraun
closed
2 years ago
0
Merge first working version
#24
JasperBraun
closed
2 years ago
0
Update python-package.yml
#23
Elliot-D-Hill
closed
2 years ago
0
Create python-package.yml
#22
Elliot-D-Hill
closed
2 years ago
0
Fix metacommunity.SimilarityFromFile
#21
JasperBraun
closed
2 years ago
0
Update refactored API
#20
JasperBraun
closed
2 years ago
0
Add modified docstrings and unit tests into OOP before refactor
#19
JasperBraun
closed
2 years ago
0
Implement generation of similarities from user similarity function
#18
Elliot-D-Hill
closed
2 years ago
1
Make package installable
#17
JasperBraun
closed
2 years ago
0
Add utilities.unique_correspondence tests and update diversity.py
#16
JasperBraun
closed
2 years ago
0
Remove caches from diversity measures
#15
JasperBraun
closed
2 years ago
0
Account for atol parameter in unittests of utilities.power_mean
#14
JasperBraun
closed
2 years ago
0
Power mean with 0 weights
#13
JasperBraun
closed
2 years ago
1
Write setup.py
#12
JasperBraun
closed
2 years ago
0
README
#11
JasperBraun
closed
1 year ago
2
Finalize package structure and imports
#10
JasperBraun
closed
2 years ago
0
Docstrings
#9
JasperBraun
closed
2 years ago
0
Integration tests
#8
JasperBraun
closed
2 years ago
0
Unit tests
#7
JasperBraun
closed
2 years ago
2
Merge final code for testing
#6
JasperBraun
closed
2 years ago
0
Add ability to pass similarity matrix as a np.ndarray to Metacommunit…
#5
Elliot-D-Hill
closed
2 years ago
0
OOP refactor
#4
Elliot-D-Hill
closed
2 years ago
0
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