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ArnovanHilten / GenNet

Framework for Interpretable Neural Networks
Apache License 2.0
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Add pathway information to topology.csv file #108

Open TaniaCuppens opened 5 months ago

TaniaCuppens commented 5 months ago

Hi,

I created the topology file with gene information using the annovar and topology commands with create_annovar_input and create_gene_network but I can't annotate with the pathway. I have tried : python GenNet.py topology -type create_pathway_KEGG -path path/to/topology/file -out path/to/topology/file -study_name ID1

But it doesn't do anything

Thank you for your help