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ArtPoon
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gotoh2
Lightweight and customizable Python/C extension for pairwise alignment of genetic sequences using the Gotoh algorithm
GNU Affero General Public License v3.0
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Failed to build on macOS Catalina
#23
ArtPoon
opened
3 years ago
0
Failing simple alignment with gop=10 (default) but not with gop=8
#22
davidchampredon
opened
4 years ago
8
Convert_fasta doesn't strip \r line terminators
#21
ewong347
closed
4 years ago
0
Changing gotoh directory name broke directory path
#20
ewong347
closed
4 years ago
1
Adding clean flag to gotoh2
#19
RouxCil
closed
4 years ago
0
Problems installing on Langley (Ubuntu 16.04.6 LTS)
#18
ArtPoon
closed
4 years ago
3
Biopp2 matrix is missing
#17
ArtPoon
closed
4 years ago
0
Strange bit matrix behaviour with local alignment
#16
ArtPoon
closed
4 years ago
8
Aligner failed on an HIV RT sequence
#15
ArtPoon
closed
6 years ago
2
Unexpected behaviour around terminal gaps
#14
donkirkby
closed
6 years ago
14
Missing file U54771.txt for unit test
#13
donkirkby
closed
6 years ago
2
Alignment sometimes fails when one sequence contains the other
#12
donkirkby
closed
7 years ago
2
Benchmarking script fails with unused matrices
#11
ArtPoon
closed
7 years ago
1
ImportError under Python 3
#10
donkirkby
closed
6 years ago
3
Missing NL4-3.txt file in unit tests
#9
donkirkby
closed
7 years ago
1
Test failed, can't find HXB2-RT.txt
#8
donkirkby
closed
7 years ago
1
Build failed: can't find Biopp.csv
#7
donkirkby
closed
7 years ago
0
Not working for sequences of about 100bp or more
#6
ArtPoon
closed
7 years ago
4
Calling align() causes crash
#5
ArtPoon
closed
6 years ago
5
Can't load module from package root
#4
ArtPoon
closed
6 years ago
2
Implement local alignment
#3
ArtPoon
closed
7 years ago
1
Refactor broke traceback
#2
ArtPoon
closed
7 years ago
6
Wrong path calculation
#1
ArtPoon
closed
7 years ago
2