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ArtPoon / kamphir

Phylogenetic inference using a tree-shape kernel in an Approximate Bayesian Computation framework
BSD 3-Clause "New" or "Revised" License
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Processing large trees is unusually slow #22

Closed ArtPoon closed 9 years ago

ArtPoon commented 9 years ago

This turns out to be a memory allocation problem for running BEAST2 MASTER.
Setting Xmx and Xms prevents java process from hanging. Otherwise Kamphir adjusts the requested number of tips down to the minimum number (waiting a prescribed amount of time before each update) which is really time-consuming and wasteful. Fixed as of commit 8b18862