New options, logging, install instructions

ArtPoon / kamphir

Phylogenetic inference using a tree-shape kernel in an Approximate Bayesian Computation framework

BSD 3-Clause "New" or "Revised" License

6 stars 2 forks source link

Closed rmcclosk closed 9 years ago

rmcclosk commented 9 years ago

Added INSTALL.md to give instructions about installing prerequisite programs.

Changed most print statements to use the logging module, because I might want to save the screen log without the logging messages interspersed.

Added a random seed option for reproducibility, and an option to log the ODE trajectories to a file.

Created some unit tests for basic multithreading and the tree kernel.

rmcclosk commented 9 years ago

Never mind, don't accept this. There's a bug...