delimiter + tipdate doesn't work as expected

ArtPoon / kamphir

Phylogenetic inference using a tree-shape kernel in an Approximate Bayesian Computation framework

BSD 3-Clause "New" or "Revised" License

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delimiter + tipdate doesn't work as expected #49

Open rmcclosk opened 9 years ago

rmcclosk commented 9 years ago

Run kamphir with this command.

python /home/rmcclosk/Documents/kamphir/kamphir.py -delimiter '_' -datefield 1 \
        -ncores 6 -nthreads 6 -nreps 6 -tscale 0.00273791 SI src/settings.SI.json data/01_prune/bc-subtypeB.timetree.nwk results/SI.log

Many errors like this:

Warning: Failed to parse tipdate from label FD8D35C1_2123
Warning: Failed to parse tipdate from label 742916E6_4147