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ArtPoon / kamphir

Phylogenetic inference using a tree-shape kernel in an Approximate Bayesian Computation framework
BSD 3-Clause "New" or "Revised" License
6 stars 2 forks source link

Parallelize kernel computation #7

Closed ArtPoon closed 9 years ago

ArtPoon commented 9 years ago

Roughly 3-fold speed-up on 6 cores.

Hypnotoad:tests art$ python testmp2.py
reading in target tree from large1.nwk
read in 1000 leaves
required 13.9972581863 seconds to simulate trees
SP 0.876682624446 35.9197080135 seconds
MP 0.876682624446 13.9371290207 seconds