Maketest Problem

[Fairenough]

I think I have installed all the required module: user@x499-desktop:/media/user/1- 10TB/Yijun_Tian/signalAlign$ pip list DEPRECATION: The default format will switch to columns in the future. You can use --format=(legacy|columns) (or define a format=(legacy|columns) in your pip.conf under the [list] section) to disable this warning. adium-theme-ubuntu (0.3.4) h5py (2.7.1) numpy (1.13.3) pandas (0.21.0) pip (9.0.1) pycurl (7.43.0) pyliblzma (0.5.3) pysam (0.13) pysqlite (1.0.1) python-dateutil (2.6.1) pytz (2017.3) rpm-python (4.12.0.1) scour (0.32) setuptools (20.7.0) six (1.10.0) unity-lens-photos (1.0) urlgrabber (3.9.1) wheel (0.29.0) yum-metadata-parser (1.1.4)

But after I make test, always went wrong like this: user@x499-desktop:/media/user/1- 10TB/Yijun_Tian/signalAlign$ make test

cd .//bin && ./signalAlignLibTests

cd .//bin && ./testSignalAlign Traceback (most recent call last): File "./testSignalAlign", line 11, in from alignmentAnalysisLib import get_first_sequence File "/media/user/1- 10TB/Yijun_Tian/signalAlign/bin/alignmentAnalysisLib.py", line 8, in from serviceCourse.parsers import read_fasta ImportError: No module named serviceCourse.parsers Makefile:39: recipe for target 'test' failed make: *** [test] Error 1

Do you know why?

[JessicaIrvine]

Hi By chance did you figure out the solution to this problem? thanks

[Fairenough]

@JessicaIrvine No. I move to another software after that.. It's called tombo resquiggle. They should have finished all the code and manual in github.

[JessicaIrvine]

@Fairenough I managed to get it to work If you are still interested. you first make sure it can find the path by typing export PYTHONPATH="$PYTHONPATH:$(pwd)" then you have to move the motif.py file into bin which can be found under scripts now the make test should work