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ArtRand / signalAlign

HMM-HDP models for MinION signal alignments
MIT License
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install issue import motif #13

Open clarepacini opened 6 years ago

clarepacini commented 6 years ago

Hi, I'm trying to install signalAlign but get the following error on testing:

cd .//bin && ./signalAlignLibTests

cd .//bin && ./testSignalAlign Traceback (most recent call last): File "./testSignalAlign", line 12, in from signalAlignLib import get_bwa_index, exonerated_bwa, exonerated_bwa_pysam File "/home/cep46/signalAlign/bin/signalAlignLib.py", line 13, in from motif import getMotif ImportError: No module named motif Makefile:39: recipe for target 'test' failed make: *** [test] Error 1

I have added signalAlign directory to my pythonpath - and have been able to find classes serviceCourse. Where should the motif module be located?

Thanks,

Clare

clarepacini commented 6 years ago

Okay, I have moved scripts/motif.py to bin/motif.py and now all tests have completed successfully so hopefully that has solved the problem!